Publications

 

2019

 

· B. Yaylak, İ. Erdoğan, B. Akgül, “Transcriptomics analysis of circular RNAs differentially expressed in apoptotic HeLa cells”, Frontiers in Genetics, 10:176, 2019. 

· Cox S, Rousseau-Tsangaris M, Abou-Zeid N, Dalle S, Leurent P, Cutivet A, Le HH, Kotb S, Bogaert B, Gardette R, Baran Y, Holder JM, Lerner L, Blay JY, Cambrosio A, Tredan O, Denèfle P*. Precision medicine in oncology: Challenges, stakes and new paradigms. Bull Cancer. 2019 Feb;106(2):97-104. 

· Ulu GT, Kiraz Y, Baran Y*. The Role of Polyunsaturated Fatty Acids in Cancer and Their Use in Cancer Treatment. Reviews in Clinical Medicine. 2019;6(3):84-90.

· Ince Yardimci A, Baskan O, Yilmaz S, Mese G, Ozcivici E, Selamet Y. Osteogenic differentiation of mesenchymal stem cells on random and aligned PAN/PPy nanofibrous scaffolds. J Biomater Appl. 2019 Nov;34(5):640-650 

· Ince Yardimci A, Aypek H, Ozturk O, Yilmaz S, Ozcivici E, Mese G, Selamet Y. CNT Incorporated Polyacrilonitrile/Polypyrrole Nanofibers as Keratinocytes Scaffold. Journal of Biomimetics Biomaterials and Biomedical Engineering 2019 Apr; 41: 69-81.

· Sarıgil O, Anil-Inevi M, Mese G, Tekin HC, Ozcivici E. Label-Free Density-Based Detection of Adipocytes of Bone Marrow Origin Using Magnetic Levitation. Analyst. 2019 Apr 23;144(9):2942-2953.

· Karadas O, Mese G, Ozcivici E. Cytotoxic Tolerance of Healthy and Cancerous Bone Cells to Anti-microbial Phenolic Compounds Depend on Culture Conditions. Appl Biochem Biotechnol. 2019 Jun;188(2):514-526.

· Küçükköse C, Yalcin-Ozuysal O. – “Effects of Notch signalling on the expression of SEMA3C, HMGA2, CXCL14, CXCR7, and CCL20 in breast cancer.” – Turkish Journal of Biology, 2019, 43, 70-76., doi: 10.3906/biy-1808-58.

· Frary A, Öztürk SC, Balık HI, Balık SK, Kızılcı G, Doğanlar S, FRARY A. 2019. Association mapping of agro-morphological traits in European hazelnut (Corylus avellana). Euphytica 215:21. doi.org/10.1007/s10681-019-2352-2.

· Frary A, Öztürk SC, Balık HI, Balık SK, Kızılcı G, Doğanlar S, FRARY A. 2019. Analysis of European hazelnut (Corylus avellana) reveals loci for cultivar improvements and the effects of domestication and selection on nut and kernel traits. Mol Genet Genomics 294:519-527. doi.org/10.1007/s00438-018-1527-1

· Khan N, Yilmaz S, Aksoy S, Uzel A, Tosun C, Kirmizibayrak PB, Bedir E. 2019. Polyethers isolated from the marine actinobacterium Streptomyces cacaoi inhibit autophagy and induce apoptosis in cancer cells. Chem Biol. Interact. Jul 1;307:167-178

 

2018 

 

· B. Akgül, İ. Erdoğan, “Intracytoplasmic re-localization of miRISC complexes”, Frontiers in Genetics, 9:403, 2018.

· M.I. Coşacak, H. Yiğit, C. Kizil, B. Akgül, “Re-arrangements in the cytoplasmic distribution of small RNAs following the maternal-to-zygotic transition in Drosophila embryos”, Genes, 9(2):82, 2018.

· M.I. Coşacak, İ.Erdoğan, A. Nalbant, B. Akgül, “Small RNA data set that includes tRNA-derived fragments from Jurkat cells treated with camptothecin”, Data in Brief, 17:397-400, 2018.

· İ. Erdoğan, M.I. Coşacak, A.Nalbant, B. Akgül, “Deep sequencing reveals two Jurkat subpopulations with distinct miRNA profiles during camptothecin-induced apoptosis”, Turkish Journal of Biology, 42:113-122 , 2018.

· Gül Amuk N*, Kurt G, Kartal Yandim M, Adan A, Baran Y. A minimally invasive transfer method of mesenchymal stem cells to the intact periodontal ligament of rat teeth: A preliminary study. Turkish Journal of Biology, 2018; 42(5): 382-391.

· Cincin ZB, Kiran B, Baran Y, Cakmakoglu B*. Hesperidin promotes programmed cell death by downregulation of nongenomic estrogen receptor signalling pathway in endometrial cancer cells. Biomedicine & Pharmacotherapy, 2018; 103: 336-345.

· Iplik ES, Ertugrul B, Kozanoglu I, Baran Y, Cakmakoglu B*. An answer to colon cancer treatment by mesenchymal stem cell originated from adipose tissue.  Iranian Journal of Basic Medical Sciences, 2018; 21 (5): 465.

· Baran Y*, Kiraz Y, Ulu GT. Kanser Moleküler Biyololisi, Kısayol Yayıncılık, 586 sayfa kitap,

· Anil-Inevi M, Yaman S, Arslan Yildiz A, Mese  GYalcin-Ozuysal O, Tekin HC, Ozcivici E. Biofabrication of in situ Self Assembled 3D Cell Cultures in a Weightlessness Environment Generated using Magnetic Levitation. Sci Rep. 2018 May 8;8(1):7239. 

· Meşe Özçivici GYalçın Özuysal Ö. Kanser Araştırmalarındanda Fare Modelleri- Kanser Moleküler Biyolojisi (2018). Kısayol Yayıncılık, Editör: Yusuf Baran, ISBN-13: 978-6052329306 

· Öztürk SC, Göktay M, Allmer J, Doğanlar S, FRARY A 2018. Development of simple sequence repeat markers in hazelnut (Corylus avellana L.) by next generation sequencing and discrimination of Turkish hazelnut cultivars. Pl Mol Biol Rep 36:800-811. doi.org/10.1007/s11105-018-1120-0

· Baytar AA, Peynircioğlu C, Sezener V, Başal H, FRARY A, Frary A, Doğanlar S 2018. Identification of stable QTLs for fiber quality and plant structure in Upland cotton (G. hirsutum L.) under drought stress. Indust Crops Prod 124:776-756. doi: 10.1016/j.indcrop.2018.08.054

· Taşcıoğlu T, Sadıkoğlu N, Doğanlar S, FRARY A 2018. Molecular genetic diversity in the Origanum genus: EST-SSR and SRAP marker analyses of the 22 species in eight sections that naturally occur in Turkey. Indust Crops Products 123: 746-761. doi.: 10.1016/j.indcrop.2018.07.027

· Gürbüz N, Uluişik S, FRARY A, Frary A, Doğanlar S 2018. Health benefits and bioactive compounds of eggplant. Food Chemistry 268:602-610. doi.: 10.1016/j.foodchem.2018.06.093

· Baytar AA, Peynircioğlu C, Sezener V, Basal H, FRARY A, Frary A, Doğanlar S. 2018. Genome wide association mapping of yield components and drought tolerance related traits in cotton. Mol Breed. 38:74. doi.: 10.1007/s11032-018-0831-0

· Öztürk SE, Göktay M, Has C, Babaoğlu M, Allmer J, Doğanlar S, FRARY A. 2018. Transcriptomic analysis of boron hyperaccumulation mechanisms in Puccinellia distans. Chemosphere 199:390-401. doi: 10.1016/j.chemosphere.2018.02.070

· Abuzayed M, FRARY A, Doğanlar S. 2018. Genetic diversity of some Palestinian and Turkish olive (Olea europaea L.) germplasm determined with SSR markers. IUG Journal of Natural Studies 26:10-17.

· Kok AB, Doganlar S, FRARY A. 2018. Molecular genetic diversity of the selenium hyperaccumulator Stanleya pinnata. Polymorphism, 1:1-9.

· Uluisik I, Karakaya HC, Koc A. The importance of boron in biological systems. J Trace Elem Med Biol. 2018 Jan;45:156-162. doi: 10.1016/j.jtemb.2017.10.008. Epub 2017 Oct 26. Review. Erratum in: J Trace Elem Med Biol. 2018 Apr 27. 

 

 

2017

 

· Ç. Göktaş, H. Yiğit, M.I. Coşacak, B. Akgül, “Differentially Expressed tRNA-Derived Small RNAs Co-Sediment Primarily with Non-Polysomal Fractions in Drosophila”, Genes, 8(11): 333, 2017.

· Işık S*, Karaman M, Adan A, Kıray M, Bağrıyanık HA, Sözmen ŞÇ, Kozanoğlu İ, Karaman Ö, Baran Y, Uzuner N. Intraperitoneal Mesenchymal Stem Cell Administration Ameliorates Allergic Rhinitis in the Murine Model. European Archives of Oto-Rhino-Laryngology and Head & Neck, 2017; 274, 197-207.

· Apohan E*, Yilmaz U, Yilmaz O, Serindag A, Kucukbay H, Yesilada O, Baran Y. Synthesis, Cytotoxic and Antimicrobial Activities of Novel Cobalt and Zinc Complexes of Benzimidazole Derivatives. Journal of Organometallic Chemistry, 2017; 828, 52-58. 

· Işık S*, Uzuner N, Karaman M, Karaman Ö, Kıray M, Kozanoğlu İ, Bağrıyanık HA,  Arıkan-Ayyıldız Z, Kartal Yandım M, Baran Y*Potent effects of mesenchymal stem cells on murine model of bronchiolitis obliterans. Iranian Journal of Allergy, Asthma and Immunology, 2017; 16(3), 205-218.

· Amuk NG, Kurt G, Baran Y*Seyrantepe V, Kartal-Yandim M, Adan A, Sönmez MF. Effects of Cell-Mediated Osteoprotegerin Gene Transfer and Mesenchymal Stem Cell Applications on Orthodontically Induced Root Resorption of Rat Teeth, European Journal of Orthodontics 2017; 39(3):235-242.

· Ozer I, Tomak A, Zareie HM, Baran Y, Bulmus V*. Effect of Molecular Architecture on Cell Interactions and Stealth Properties of PEG. Biomacromolecules, 2017;18(9): 2699-2710.

· Işık S, Uzuner N, Karaman M, Karaman Ö, Kıray M, Kozanoğlu İ, Alper Bağrıyanık H, Arıkan-Ayyıldız Z, Kartal Yandım M, Baran Y*Effects of Intraperitoneal Injection of Allogeneic Bone Marrow-derived Mesenchymal Stem Cells on Bronchiolitis Obliterans in Mice Model. Iran J Allergy Asthma Immunol, 2017; 16(3): 205-218.

· Neergheen-Bhujun V, Awan AT, Baran Y, Bunnefeld N, Chan K, Dela Cruz TE, Egamberdieva D, Elsässer S, Johnson MV, Komai S, Konevega AL, Malone JH, Mason P, Nguon R, Piper R, Shrestha UB, Pešić M, Kagansky A*. Biodiversity, drug discovery, and the future of global health: Introducing the biodiversity to biomedicine consortium, a call to action. Journal of Global Health. 2017 Dec;7(2):

· Aypek H, Meşe G.  Alteration of protein localization and intracellular calcium content due to connexin26 D50A and A88V mutations.  Turkish Journal of Biochemistry. 2017 42(2).

· Baskan O, Mese G, Ozcivici E. Low-intensity vibrations normalize adipogenesis-induced morphological and molecular changes of adult mesenchymal stem cells. Proc Inst Mech Eng H. 2017 Feb;231(2):160-168.

· G. Bati-Ayaz, A. Can and D. Pesen Okvur*. Cellular distribution of invadopodia is regulated by nanometer scale protein patterns. 2017, European Journal of Cell Biology S0171-9335(16)30132-7. doi: 10.1016/j.ejcb.2017.08.001.

· Ӧztürk SC, Balik HI, Balik SK, Kizilci G, Duyar O, Doğanlar S, FRARY A. 2017. Molecular genetic diversity of the Turkish national hazelnut collection and selection of a core set. Tree Genet Genomes 13:113. doi: 10.1007/s11295-017-1195-z

· Göl Ş, Göktay M, Allmer J, Doğanlar S, FRARY A. 2017. Newly developed SSR markers reveal genetic diversity and geographical clustering in spinach (Spinacia oleracea). Molecular Genet Genomics 292:847-855. doi: 10.1007/s00438-017-1314-4

· Selale H, Dağlı F, Mutlu N, Doğanlar S, FRARY A. 2017. Cry1Ac-mediated resistance to tomato leaf miner (Tuta absoluta) in tomato. Plant Cell Tissue Org Cult 131:65-73. doi: 10.1007/s11240-017-1262-z

· Gol S, Doganlar S, FRARY A. 2017. Relationship between geographical origin, seed size and genetic diversity in faba bean (Vicia faba L.) as revealed by SSR markers. Mol Genet Genomics 292:991-999. doi: 10.1007/s00438-017-1326-0

· Abuzayed M, Göktay M, Allmer J, Doğanlar S, FRARY A 2017. Development of genomic simple sequence repeat markers in faba bean by next generation sequencing. Plant Mol Biol Rep 35: 61-71doi: 10.1007/s11105-016-1003-1.

· Uncu AT, Uncu AO, FRARY A, Doganlar S. 2017. Barcode DNA length polymorphisms vs fatty acid profiling for adulteration detection in olive oil. Food Chem 221:1026-1033. doi: 10.1016/j.foodchem.2016.11.059

· Ozturk SC, Ozturk SE, Celik I, Stampar F, Veberic R, Doganlar S, Solar A, FRARY A. 2017. Molecular genetic diversity and association mapping of nut and kernel traits in Slovenian hazelnut (Corylus avellana) germplasm. Tree Genet Genomes 13:16. doi: 10.1007/s11295-016-1098-4.

· Celik I, Gurbuz N, Uncu AT, FRARY ADoganlar S. 2017. Genome-wide SNP discovery and QTL mapping for fruit quality traits in inbred backcross lines (IBLs) of Solanum pimpinellifolium using genotyping by sequencing. BMC Genomics 18:1. doi: 10.1186/s12864-016-3406-7

· Baytar AA, Erdogan O, FRARY A, Frary A, Doganlar S. 2017. Molecular diversity and identification of alleles for Verticillium wilt resistance in elite cotton (Gossypium hirsutum L.) germplasm. Euphytica 213:31. doi: 10.1007/s10681-016-1787-y

· Abuzayed M, El-Dabba N, FRARY A, Doganlar S. 2017. GDdom: An online tool for calculation of dominant marker gene diversity. Biochem Genet 55:155-157. doi: 10.1007/s10528-016-9779-0

· Uysal O, Cakiroglu C, Koc A, Karakaya HC. Characterization of the BETA1 gene, which might play a role in Beta vulgaris subsp maritima salt tolerance. Turkısh journal of botany. 41: 552-558. Doi : 10.3906/bot-1702-24. 2017

 

2016

 

· Nalbant A, Kiraz Y, Baran Y*T cells in Tumor Microenvironment. Tumor Biology, 2016; 37 (1): 39-45

· Adan A, Alizada G, Kiraz Y, Nalbant A, Baran Y*Flow cytometry: Basic principles and applications. Critical Reviews in Biotechnology, 2016; 14: 1-14.

· Kiraz Y, Adan A, Kartal Yandim M, Baran Y*. Major apoptotic mechanisms and genes involved in apoptosis. Tumor Biology, 2016; 37(7): 8471-8476.

· Yandim MK, Ceylan C, Elmas E, Baran Y*. A molecular and biophysical comparison of macromolecular changes in imatinib-sensitive and imatinib-resistant K562 cells exposed to ponatinib. Tumor Biology, 2016; 37(2): 2365-2378.

· Adan A, Baran Y*Fisetin and hesperetin induced apoptosis and cell cycle arrest in chronic myeloid leukemia cells accompanied by modulation of cellular signalingTumor Biology, 2016; 37(5): 5781-5795.

· Kiraz Y, Neergheen-Bhujun VS, Rummun N, Baran Y*Apoptotic Effects Of Non-Edible Parts Of Punica Granatum On Human Multiple Myeloma Cells. Tumor Biology, 2016; 37(2): 1803-1815.

· Adan A, Kiraz Y, Baran Y*. Cell Proliferation And Cytotoxicity Assays. Current Pharmaceutical Biotechnology, 2016; 17(14): 1213-1221.

· Aypek H, Bay V, Meşe G. Altered cellular localization and hemichannel activities of KID syndrome associated connexin26 I30N and D50Y mutations. BMC Cell Biology. 2016 Feb 2;17:5.

· Shuja Z, Li L, Gupta S, Mese G, White TW. Connexin26 Mutations Causing Palmoplantar Keratoderma and Deafness Interact with Connexin43, Modifying Gap Junction and Hemichannel Properties. Journal of Investigative Dermatology. 2016 Jan;136(1):225-35.

· Mese GYalçin Özuysal Ö. Epigenetics of Breast Cancer: DNA Methylome and Global HistoneModifications- Epigenetic Advancements in Cancer (2016). Springer, Editors: Mishra Manoj K, Bishnupuri Kumar S, Edition:1, ISBN:978-3-319-24949-0

· Frary A, Doganlar S, FRARY A. 2016. Synteny among Solanaceae genomes. In: M. Causse, J Giovannoni, (eds.), The Tomato Genome, Compendium of Plant Genomes, Berlin, Springer, pp. 217-243. doi.org/10.1007/978-3-662-53389-5_12.

· Uncu AO, FRARY A, Karlovsky P, Doganlar S. 2016. High-throughput single nucleotide polymorphism (SNP) identification and mapping in the sesame (Sesamum indicum L.) genome with genotyping by sequencing (GBS) analysis. Mol Breed 36:173. doi: 10.1007/s11032-016-0604-6.

· Celik I, Sogut MA, Ozkaynak E, Doganlar S, FRARY A. 2016. Physical mapping of NBS-coding resistance genes to the Me-gene cluster on chromosome P9 reveals markers tightly linked to the N gene for root-knot nematode resistance in pepper. Mol Breed 36:137. doi: 10.1007/s11032-016-0560-1

· Celik I, Bodur S, FRARY A, Doganlar S. 2016. Genome-wide SNP discovery and genetic linkage map construction in sunflower (Helianthus annuus L.) using a genotyping by sequencing (GBS) approach. Mol Breed 36:133. doi: 10.1007/s11032-016-0558-8

· Gol S, Doganlar S, FRARY A. 2016. Genetic diversity and population structure of faba bean (Vicia faba) from Turkey. HortScience 51:980-983. doi: 10.21273/HORTSCI11022-16

· Celik I, Camci H, Kose A, Celikoglu Kosar F, Doganlar S, FRARY A. 2016. Molecular genetic diversity and association mapping of morphine content and agronomic traits in Turkish opium poppy (Papaver somniferum) germplasm. Mol Breed 36:46. doi: 10.1007/s11032-016-0469-8

 

2015

 

· M. Kant, B. Akgül, A. Nalbant, “Endogenous heat shock protein GROEL of A. Actinomycetemcomitans preferentially targets primary human CD8+ T cells”, Tr. J. Biology, 39: 104-110, 2015.

· Cincin ZB, Unlu M, Kıran B, Bireller ES, Baran Y*, Cakmakoglu B*. Apoptotic Effects of Quercitrin in DLD-1 Colon Cancer Cell Lines. Pathology and Oncology Research, 2015: 21; 333–338.

· Tufekçi O, Yandim MK, Oren H, Irken G, Baran Y*. Targeting FOXM1 Transcription Factor In T-Cell Acute Lymphoblastic Leukemia. Leukemia Research, 2015: 39(3); 342-347.

· Baran Y*. Kanserde İlaç Dirençliliği. Günce, Türkiye Bilimler Akademisi Dergisi, 2015; 48: 67-70.

· Gokbulut AA, Baran Y*. A Novel Natural Product, KL-21, Inhibits Proliferation and Induces Apoptosis in Chronic Lymphocytic Leukemia Cells. Turkish Journal of Hematology, 2015; 32(2): 118-26.

· Katgı A*, Sevindik OG, Gokbulut AA, Ozsan HG, Yuksel F, Solmaz SM, Alacacıoglu I, Ozcan MA, Demirkan F, Baran Y, Piskin O.  Nilotinib Does Not Alter the Secretory Funcions of Carotid Artery Endothelıal Cells in a Prothrombotic or Antithrombotic Fashion. Clinical and Applied Thrombosis/Hemostasis, 2015; 21(7): 678-83.

· Cincin ZB, Unlu M, Kiran B, Bireller ES, Kiraz Y, Baran Y, Cakmakoglu B*. Anti-proliferative, apoptotic and signal transduction effects of hesperidin in non-small cell lung cancer cells. Cellular Oncology, 2015; 38(3): 195-204.

· Mutlu P, Kiraz Y, Gündüz U, BaranY*. An Update on Molecular Biology And Drug Resistance Mechanisms of Multiple Myeloma. Critical Reviews in Oncology/Hematology, 201596(3): 413-424.

· Adan A, Baran Y*. The Pleiotropic Effects of Fisetin and Hesperetin on Human Acute Promyelocytic Leukemia Cells Are Mediated through Apoptosis, Cell Cycle Arrest and Alterations in Signaling Networks. Tumor Biology,2015; 36(11): 8973-8984.

· Kaymaz BT, Günel NS, Ceyhan M, Çetintaş VB, Özel B, Yandım MK, Kıpçak S, Aktan Ç, Gökbulut AA, Baran Y, Can BK. Revealing genome-wide mRNA and microRNA expression patterns in leukemic cells highlighted Bhsa-miR-2278 as a tumor suppressor for regain of chemotherapeutic imatinib response due to targeting STAT5A. Tumor Biology; 2015; 36(10): 7915-7927.

· Kartal Yandım M, Adan Gokbulut A, Baran Y*Molecular Mechanisms of Drug Resistance and its Reversal in Cancer. Critical Reviews in Biotechnology, 2015; 36(4): 716-726.

· Santa Cruz A, Mese G, Valiuniene L, Brink PR, White TW, Valiunas V. Altered conductance and permeability of Cx40 mutations associated with atrial fibrillation. The Journal of General Physiology. 2015 Nov;146(5):387-98.

· Zengin T, Ekinci B, Kucukkose C, Yalcin-Ozuysal O. – “IRF6 is involved in the regulation of cell proliferation and transformation in MCF10A cells downstream of Notch signaling” – PLoS ONE, 2015, 10(7): e0132757, doi:10.1371/journal.pone.0132757.

· Rajaram R, Buric D, Caikovski M, Ayyanan A, Rougemont J, Shan J, Vainio S, Yalcin-Ozuysal O, Brisken C. – “Progesterone and Wnt4 control mammary stem cells via myoepithelial crosstalk” – EMBO Journal, 2015, 4;34(5):641, doi: 10.15252/embj.201490434. 

· U. Horzum, B. Ozdil and D. Pesen Okvur*. Differentiation of normal and cancer cell adhesion on custom designed protein nanopatterns. Nano Letters 2015, (15): 5393−5403. Impact factor 13.59.

· Gurbuz N, Karabey F, TK Ozturk, Kilinc A, FRARY A, Doganlar S. 2015. Glycoalkaloid isolation from Solanum linnaeanum berries. Fruits 70:371-375. doi: 10.1051/fruits/2015037

· Bar C, Doganlar S, FRARY A. 2015. Genetic relationships among Eurasian Puccinellia distans genotypes. Biochem Systematics Ecol 62:20-24. doi: 10.1016/j.bse.2015.07.031

· Uncu AT, Uncu AD, FRARY A, Doganlar S. 2015. Authentication of botanical origin in herbal teas by plastid noncoding DNA length polymorphisms. J Agric Food Chem 63:5920-5929. doi: 10.1021/acs.jafc.5b01255

· Uncu AT, Celik I, Devran Z, Ozkaynak E, FRARY A, Frary A, Doganlar S. 2015. Development of a SNP-based CAPS assay for the Me1 gene conferring resistance to root knot nematodes in pepper. Euphytica 206:393-399doi: 10.1007/s10681-015-1489-x

· Uncu AD, Uncu AT, Celik I, Doganlar S, FRARY A. 2015. A primer to molecular phylogenetic analyses in plants. Crit Rev Plant Sci 34:454-468. doi: 10.1080/07352689.2015.1047712

· Uncu AD, Gultekin V, Allmer J, FRARY A, Doganlar S. 2015. Genomic simple sequence markers reveal patterns of genetic relatedness and diversity in sesame. Plant Genome 8:1-12. doi:10.3835/plantgenome2014.11.0087.

· Uncu A, FRARY A, Doganlar S. 2015. Cultivar origin and admixture detection in Turkish olive oils by SNP-based CAPS assays. J Agric Food Chem 63:2284-2295. doi: 10.1021/acs.jafc.5b00090

· FRARY A, Tekin P, Celik I, Furat S, Uzun B, Doganlar S. 2015. Morphological and molecular diversity in Turkish sesame germplasm and selection of a core set for inclusion in the national collection. Crop Sci 55:702-711. doi: 10.2135/cropsci2014.01.0048

· R.I. Mehta, C. Tosun, S. Ivanova, N. Tsymbalyuk, B.M. Famakin, M.S. Kwon, R.J. Castellani, V. Gerzanich, J.M. Simard. “Sur1-Trmp4 cation channel expression in human cerebral infarcts”, J. Neuropathol. Exp. Neurol., 2015;74(8):835-49.

· C. Tosun, C. Hong, B. Carussilo, S. Ivanova,  V. Gerzanich, J.M. Simard. “Angiogenesis induced by prenatal ischemia predisposes to periventricular hemorrhage during postnatal mechanical ventilation”, Pediatric Research, 2015; 77(5):663-73.

 

2014

 

· S. Hamid, B. Akgül, “Master regulators of post-transcriptional gene expression are subject to regulation”, Methods in Molecular Biology, 1107:303-310, 2014

· B. Akgül, Ç. Göktaş, “Gene reporter assay to validate microRNA targets in Drosophila S2 cells”, Methods in Molecular Biology, 1107:233-242, 2014

· Ömür Ö*, Baran Y, Oral A, Ceylan Y. Fluorine-18-Fluorodeoxyglucose Positron EmissionTomography/ComputedTomography For Extranodal Staging Of Non-Hodgkin Lymphoma And Hodgkin Disease. Diagnostic and Interventional Radiology 2014;0(2):185-192.

· Avci CB, Baran Y*. Micro RNAs in Personilized medicine. Methods in Molecular Biology; miRNomics: MicroRNA Biology and Computational Analysis, Humana Press, 2014, 1107:311-25

· Aydemir LY, Adan Gokbulut A, Baran Y, Yemenicioglu A*. Bioactive, functional and edible film making properties of different protein isolates from Turkish hazelnut (Corylus avellana L.) meal obtained from oil extraction. Food Hydrocolloids, 2014; 36:130-142.

· Solmaz S, Gokbulut AA, Cincin B, Ozdogu H, Boga C, Cakmakoglu B, Kozanoglu I, Baran Y*. Therapeutic Potential of Apigenin, a Plant Flavonoid, for Imatinib-Sensitive and Resistant Chronic Myeloid Leukemia Cells. Nutrition and Cancer; An International Journal, 2014; 66(4): 599-612. 

· Celikkanat D, Baran Y*. Comparative development of knowledge-based bioeconomy in the European Union and Turkey. Critical Reviews in Biotechnology, 2014, 34(3): 269-280.

· Omur O, Baran Y*.  An Update on Molecular Biology of Thyroid Cancers. Critical Reviews in Oncology/Hematology, 2014; 90(3): 233-252.

· Cincin ZB, Unlu M, Kıran B, Bireller ES, Baran Y*, Cakmakoglu B*. Molecular Mechanisms of Quercitrin-Induced Apoptosis in Non Small Cell Lung Cancer Cells. Archives of Medical Research, 2014; 45(6): 445-454.

· Kiraz Y, Unlu M, Kartal Yandim M, Baran Y*. Molecular Biology of Stem Cells. Hematolog, 2014: 4(2); 255-265.

· Unlu M, Kiraz Y, Kacı FN, Baran Y*. Multidrug Resistance in Chronic Myeloid Leukemia. Turkish Journal of Biology, 2014;38(6):806-816. 

· U. Horzum, B. Ozdil and D. Pesen Okvur*. Micrometer Scale Spacings between Fibronectin Nanodots Regulate Cell Morphology and Focal Adhesions. Materials Research Express 2014, 1: 025402

· G. Bati and D. Pesen Okvur*. Invadopodia:Proteolytic feet of cancer cells. Turkish Journal of Biology 2014, (38): 740-747. Review article.

· U. Horzum, B. Ozdil and D. Pesen Okvur*. Step-by-step quantitative analysis of focal adhesions. MethodsX 2014 (1):56-59.

· B. Ozdil, S. Önal, T. Oruç and D. Pesen Okvur*. Fabrication of 3D Controlled in vitro Microenvironments. MethodsX 2014 (1):60-66.

· Top O, Bar C, Okmen B, Ozer DY, Ruscuklu D, Tamer N, FRARY A, Doganlar S. 2014. Exploration of three Solanum species for improvement of antioxidant traits in tomato. HortSci 49:1003-1009. doi.org/10.21273/HORTSCI.49.8.1003

· Doganlar S, Frary A, Daunay MC, Huvenaars K, Mank R, FRARY A. 2014. High resolution map of eggplant (Solanum melongena) reveals extensive chromosome rearrangement in domesticated members of the Solanaceae. Euphytica 198:231-241. doi.org/10.1007/s10681-014-1096-2

· Frary A, FRARY A, Daunay MC, Huvenaars K, Mank R, Doganlar S. 2014. QTL hotspots in eggplant (Solanum melongena) detected with a high resolution map and CIM analysis. Euphytica 197:211-228. doi.org/10.1007/s10681-013-1060-6

· Celik I, Gultekin V, Allmer, J, Doganlar S, FRARY A. 2014. Development of genomic simple sequence repeat markers in opium poppy by next generation sequencing. Mol Breed 34:323-334. doi.org/10.1007/s11032-014-0036-0

· Bozdag GO, Kaya A, Koc A, Noll GA, Prüfer D, Karakaya HC. Characterization of a cDNA from Beta maritima that confers nickel tolerance in yeast. Gene. 2014 Apr 1;538(2):251-7. doi: 10.1016/j.gene.2014.01.052. Epub 2014 Jan 31. 

· Muid KA, Karakaya HC, Koc A. Absence of superoxide dismutase activity causes nuclear DNA fragmentation during the aging process. Biochem Biophys Res Commun. 2014 Feb 7;444(2):260-3. doi: 10.1016/j.bbrc.2014.01.056. Epub 2014 Jan 22. 

· J.M. Simard, A. Pampori, K. Keledjian, C. Tosun, G. Schwartzbauer, S. Ivanova, V. Gerzanich. “Exposure of the thorax to a sublethal blast wave causes a hypodynamic pulse that leads to perivenular inflammation in the brain”, Neurotrauma, 2014; 31(14):1292-304.

· C.M. Hong, C. Tosun, D.B. Kurland, V. Gerzanich, D. Schreibman, J.M. Simard. Biomarkers as outcome predictors in subarachnoid hemorrhage—a systemic review. Biomarkers, 2014;19(2):95-108.

 

2013              

 

· Kozanoglu I, Yandim MK, Cincin ZB, Ozdogu H, Cakmakoglu B, Baran Y*. New indication for therapeutic potential of an old well-known drug (propranolol) for multiple myeloma. Journal of Cancer Research and Clinical Oncology. 2013; 139(2): 327-335.

· Kaymaz BT, Selvi N, Adan Gokbulut A, Aktan Ç, Gündüz C, Saydam G, Şahin F, Çetintaş VB, Baran Y, Kosova B*. Suppression of STAT5A and STAT5B Chronic Myeloid Leukemia Cells via siRNA and Antisense-Oligonucleotide Applications with the Induction of Apoptosis. American Journal of Blood Research, 2013; 3(1): 58-70.

· Baran Y*, Ceylan C, Camgoz A. The roles of macromolecules in imatinib resistance of chronic myeloid leukemia cells by Fourier transform infrared spectroscopy. Biomedicine and Pharmacotherapy, 2013; 67: 221-227.

· Senarisoy M, Canturk P, Zencir S, Baran Y, Topcu Z*. Gossypol interferes with both type I and type II topoisomerases activities without generating strand breaks. Cell Biochemistry and Biophysics, 2013; 66(1): 199-204.

· Turan T, Sanlı-Mohamed G*, Baran Y*. Changes in Protein Profiles of Multiple Myeloma Cells in Response to Bortezomib. Leukemia and Lymphoma, 2013; 54(5): 1061-1068.

· Camgoz A, Gencer EB, Ural AU, Baran Y*. Mechanisms responsible for nilotinib resistance in human chronic myeloid leukemia cells and reversal of resistance. Leukemia and Lymphoma, 2013; 54(6): 1279-1287.

· Sunay O, Can G, Cakir Z, Denek Z, Kozanoğlu I, Erdil G, Mustafa M, Baran Y*. Autologous Rabbit Adipose Tissue Derived Mesenchymal Stem Cells For The Treatment Of Bone Injuries With Distraction Osteogenesis. Cytotherapy, 2013; 15(6): 690-702.

· Firatligil B, Avci CB, Baran Y*. mir-17 in Imatinib Resistance and Response to Tryosine Kinase Inhibitors in Chronic Myeloid Leukemia Cells. J. BUON, 2013; 18(2):437-441.

· Gokbulut AA, Apohan E, Baran Y*. Resveratrol and quercetin induced apoptosis of human 232B4 chronic lymphocytic leukemia cells by activation of caspase-3 and cell cycle arrest. Hematology, 2013; 18(3):144-50.

· Bozkurt S*, Özkan T, Özmen F, Baran Y, Sunguroğlu A, Kansu E. The roles of epigenetic modifications of proapoptotic BID and BIM genes in imatinib-resistant chronic myeloid leukemia cellsHematology, 2013, 18(4): 217-223.

· Kiper HD, Tezcanli B, Gokbulut AA, Selvi N, Avci CB, Kosova BK, Iskender G, Yandım MK, Gunduz C, Sahin F, Baran Y*, Saydam G. STAT pathway in the regulation of zoledronic acid-induced apoptosis in chronic myeloid leukemia cells. Biomedicine and Pharmacotherapy, 2013; 67(6):527-532.

· Can G, Akpinar B, Baran Y, Zhivotovsky B, Olsson M*. 5-Fluouracil signaling through a calcium-calmodulin-dependent pathway is required for p53 activation and apoptosis in colon carcinoma cells. Oncogene, 2013; 32(38):4529-4538.

· Comert M, Baran Y*, Saydam G. Changes in moleculer biology of Chronic Myeloid Leukemia in Tyrosine Kinase Inhibitor era. American Journal of Blood Research, 2013; (3):191-200.

· Yilmaz AF, Saydam G, Sahin F, Baran Y*. Granulocytic Sarcoma: A Systematic Review. American Journal of Blood Research 2013;3(4):265-270.

· Gokbulut AA, Yandım MK, Iskender G, Baran Y*. Novel Agents Targeting Bioactive Sphingolipids for the Treatment of Cancer. Current Medicinal Chemistry, 2013; 20: 108-122.

· Yandım MK, Apohan E, Baran Y*. Therapeutic Potential of Targeting Ceramide/Glucosylceramide Pathway in Cancer. Cancer Chemotherapy and Pharmacology, 2013; 71(1): 13-20.

· Tanos T, Sflomos G, Echeverria PC, Ayyanan A, Gutierrez M, Delaloye JF, Raffoul W, Fiche M, Dougall W, Schneider P, Yalcin-Ozuysal O, Brisken C. – “Progesterone/RANKL Is a Major Regulatory Axis in the Human Breast” – Science Translational Medicine, 2013, 24;5(182):182ra55, doi: 10.1126/scitranslmed.3005654. 

· Uncu AO, Doganlar S, FRARY A. 2013. Biotechnology for enhanced nutritional quality in plants. Crit Rev Plant Sci 32:321-343. doi.org/10.1080/07352689.2013.781453.

· Selale H, Celik I, Gultekin V, Allmer J, Doganlar S, FRARY A. 2013. Development of EST-SSR markers for diversity and breeding studies in opium poppy. Plant Breed 132:344-351. doi.org/10.1111/pbr.12059

· FRARY ASıgva HO, Tan A, Taskin T, Inal A, Mutlu S, Haytaoglu M, Doganlar S.  2013. Molecular genetic diversity in the Turkish national melon collection and selection of a preliminary core set. J Amer Soc Hort Sci 138:50-56. doi.org/10.21273/JASHS.138.1.50

· Lebeau A, Gouy M, Daunay MC, Wicker E, Chiroleu F, Prior P, FRARY A, Dintinger J. 2013. Genetic mapping of a major dominant gene for resistance to Ralstonia solanacearum in eggplant. Theor Appl Genet 126:143-158.doi.org/10.1007/s00122-012-1969-5

· Erbasol I, Bozdag GO, Koc A, Pedas P, Karakaya HC. Characterization of two genes encoding metal tolerance proteins from Beta vulgaris subspecies maritima that confers manganese tolerance in yeast. Biometals. 2013 Oct;26(5):795-804. doi: 10.1007/s10534-013- 9658-7. Epub 2013 Jul 18. 

· D.B. Kurland, C. Tosun, A. Pampori, J.K. Karimy, N.M. Caffes, V. Gerzanich, J.M. Simard. Glibenclamide for the treatment of acute CNS injury”, Pharmaceuticals, 2013; 6(10):1287-303.

· R.I. Mehta, S.Ivanova, C. Tosun, R.J. Castellani, V. Gerzanich, J.M. Simard. “Sulfonylurea receptor 1 expression in human cerebral infarcts”, J. Neuropathol. Exp. Neurol., 2013; 72(9):871-83.

· C. Tosun, M.T. Koltz, D.B. Kurland, H. Ijaz, M. Gurakar, G. Schwartzbauer, T. Coksaygan, S. Ivanova, V. Gerzanich, J.M. Simard. “The protective effect of glibenclamide in a model of hemorrhagic encephalopathy of prematurity”, Brain Sci., 2013; 3(1):215-238.

· C. Tosun, D.B. Kurland, R. Mehta, R.J. Castellani, J.L. deJong, M.S. Kwon, S.K. Woo, V. Gerzanich, J.M. Simard. “Inhibition of the Sur1-Trpm4 channel reduces neuroinflammation and cognitive impairment in subarachnoid hemorrhage”, Stroke, 2013

 

2012

 

· T. Saygılı, S. Akıncılar, B. Akgül, A. Nalbant, “Aggregatibacter actinomycetemcomitans GroEL Protein Promotes Conversion of Human CD4+T Cells into IFN-gamma IL10 Producing Tbet+ Th1 Cells”, PLOS ONE, e49252 pp., 2012

· Ekiz HA, Can G, Baran Y*. Role of autophagy in the progression and suppression of leukemias. Critical Reviews in Hematology/Oncology, 2012; 81(3): 275-285.

· Bassoy EY and Baran Y*. Bioactive Sphingolipids in Docetaxel-Induced Apoptosis in Human Prostate Cancer Cells. Biomedicine And Pharmacotherapy, 2012; 66(2): 103-110. 

· Purclutepe O, Iskender G, Kiper HD, Tezcanli B, Selvi N, Avci CB, Kosova B, Sahin F, Baran Y*, Saydam G. Enalapril-Induced Apoptosis of Acute Promyeloctic Leukemia Cells  Involves STAT5A. Anticancer Research, 2012; 32: 2885-2894

· Ceylan C, Camgoz A, Baran Y*. Macromolecular changes in nilotinib resistant K562 cells; an in vitro study by Fourier transform infrared spectroscopy. Technology in Cancer Research & Treatment, 2012; 11(4): 333-344.

· Can G, Cakir Z, Kartal M, Gunduz U, Baran Y*. Apoptotic Effects of Resveratrol, a Grape Polyphenol, on Imatinib Sensitive and Resistant K562 Cronic Myeloid Leukemia CellsAnticancer Research, 2012; 32(7): 2673-8.

· Baran Y*, Saydam G. Cumulative clinical experience from a decade of use: imatinib as first-line treatment of chronic myeloid leukemia. Journal of Blood Medicine, 2012; 3: 139–150.

· Bozcuk H, Abali H, Coskun S, Aydıner A, Çinkaya A, Demirkazık A, Özet A, Yolcu A, Balkan A, Çavdar A, Kefeli AÜ, Uluç BO, Atasoy B, Demirkan B, Yalçın B, Eroğlu C, Yalman D, Kılıç D, Tunalı D, Fırat D, Seber E, Üçgül Çavuşoğlu E, Ulukaya E, Kaytan Sağlam E, Tezcanlı E, Eryılmaz E, Dinçbaş FÖ, Telli F, Yumuk F, Başaran G, Çağlar HB, Sönmez H, Yılmaz H, Engin H, Helvacı K, Sönmez K, Koral L, Artaç M, Fuat Eren M, Koçar M, Beyzadeoğlu M, Akın M, Benekli M, Cengiz M, Erman M, Yıldız M, Doğan M, Balkan M, Eraktuğ N, Ünal OÜ, Şencan O, Erpolat Ö, Saip P, Kılıçkap S, Selçuk Seber SO, Paydaş S, Sarıhan S, Kömürcü Ş, Demirkasımoğlu T, Korkmaz T, Yetişyiğit T, Yavuzşen T, Evrensel T, Akman T, Abacıoğlu U, Kefeli U, Egeli Ü, Elgin Y, Baran Y, Bulut Z (Alphabetical order). The correlates of benefit from neoadjuvant chemotherapy before surgery in non-small-cell lung cancer: a metaregression analysis. World Journal of Surgical Oncology, 2012; 10(1): 161-167.

· Kozanoğlu İ*, Baran Y*. Hematoloji laboratuarında moleküler tanı yöntemlerinin kullanılması The use of molecular diagnostic methods in hematology laboratory. Turkiye Klinikleri J Hem Onc-Special Topics, 2012; 5(4): 87-93.

· Levit NA, Mese G, Basaly MG, White TW. Pathological hemichannels associated with human Cx26 mutations causing Keratitis-Ichthyosis-Deafness syndrome. Biochimica et Biophysica Acta. 2012 Aug;1818(8):2014-9.

· Selale H, Sıgva HO, Celik I, Doganlar S, FRARY A. 2012. Water-soluble antioxidant potential of melon lines grown in Turkey. Inter J Food Prop, 15:145-156. doi.org/10.1080/10942911003754700

· Frary A, FRARY A. 2012. Physiology of metabolites. In: Peppers: Botany, Production and Uses, chapter 13, ed. V. Russo, CABI Publishers, pp. 176-188.

· J.M. Simard, C. Tosun, S. Ivanova, D.B. Kurland, C. Hong, L. Radecki, C. Gisriel, R. Mehta, D. Schreibman, V. Gerzanich. “Heparin reduces neuroinflammation and transsynaptic neuronal apoptosis in a model of subarachnoid hemorrhage”, Transl. Stroke Res., 2012; 3(Suppl1):155-65.

 

2011

 

·  Cakir Z, Saydam G, Sahin F, Baran Y*. The Roles Of Bioactive Sphingolipids In Resveratrol-Induced Apoptosis In HL60 Acute Myeloid Leukemia Cells. Journal Of Cancer Research And Clinical Oncology, 2011; 137: 279–286.

· Avcı CB, Gunduz C, Baran Y, Sahin F, Yilmaz S, Dogan ZO, Saydam G*. Caffeic Acid Phenethyl Esther Triggers Apoptosis Through Induction of Loss of Mitochondrial Membrane Potential in CCRF-CEM. Journal of Cancer Research and Clinical Oncology, 2011; 137: 41-47.  

· Can G, Ekiz A, Baran Y*. Imatinib induces autophagy through BECLIN-1 and ATG5 genes in chronic myeloid leukemia cells. Hematology, 2011; 16(2): 95-99. 

· Kartal M, Saydam G, Sahin, Baran Y*. Resveratrol triggers apoptosis through regulating ceramide metabolizing genes in human K562 chronic myeloid leukemia cells. Nutrition and Cancer; An International Journal, 2011; 63(4): 637-644.

· Sanli MG, Turan T, Ekiz HA, Baran Y*. The importance of protein profiling in the diagnosis and treatment of hematologic malignancies. Turkish Journal of Hematology, 2011; 28: 1-14.

· Mutlu P, Baran Y, Ural AU, Avcu F, Dirican B, Beyzadeoglu M, Gündüz U*. Effect Of Cobalt-60 (Γ Radiation) On Multidrug Resistant Multiple Myeloma Cell Lines. Cell Biology International, 2011; 35(7): 721-5.

· Salas A, Ponnusamy S, Senkal CE, Meyers MA, Selvam SP, Saddoughi SA, Apohan E, Sentelle RD, Smith C, Gault CR, Obeid LM, El-Shewy HM, Oaks J, Ramasamy S, Marcucci G, Baran Y, Mahajan S, Fernandes D, Stuart RK, Perrotti D, Ogretmen B*. : Sphingosine kinase-1 and sphingosine 1-phosphate receptor 2 mediate Bcr-Abl1 stability and drug resistance by modulation of protein phosphatase 2A. Blood, 2011; 117(22): 5941-5952.

· Ekiz HA, Baran Y*. Bioactive Sphingolipids in Response to Chemotherapy: A Scope on Leukemias. Anti-Cancer Agents in Medicinal Chemistry, 2011; 11: 385-397.

· Camgoz A, Gencer EB, Ural AU, Avcu F, Baran Y*. Roles of ceramide synthase and ceramide clearence genes in nilotinib-induced cell death in chronic myeloid leukemia cells. Leukemia and Lymphoma, 2011; 52(8): 1574-84.

· Firinci F*, Karaman M, Baran Y, Bagriyanik A, Ayyildiz ZA, Kiray M, Kozanoglu I, Yilmaz O, Uzuner N, Karaman O. Mesenchymal Stem Cells Ameliorate The Histopathological Changes in a Murine Model of Chronic Asthma. International Immunopharmacology, 2011; 11(8): 1120-1126.

· Avcı ÇB, Yılmaz S, Dogan ZO, Saydam G, Dodurga Y, Ekiz HA, Kartal M, Sahin F, Baran Y*, Gunduz C. Quercetin-induced Apoptosis involves increased HTERT enzyme activity of Leukemic Cells. Hematology, 2011; 16(5): 303-307.

·  Baran Y*, Bielawski J, Gunduz U, Ogretmen B. Targeting glucosylceramide synthase sensitizes imatinib-resistant chronic myeloid leukemia cells via endogenous ceramide accumulation.  Journal of Cancer Research and Clinical Oncology, 2011; 137(10): 1535-1544.

· Gencer EB, Ural AU, Avcu F, Baran Y*. A novel mechanism of dasatinib-induced apoptosis in chronic myeloid leukemia; ceramide synthase and ceramide clearance genes. Annals of Hematology, 2011; 90(11): 1265-1275.

· Avcu F, Avcu N*, Er N, Kansu Ö, Baran Y, Pekel A, Ural AU. The Cytotoxic and Apoptotic-Necrotic Effects of Whitening Materials on Human Gingival Fibroblasts.  Clinical Dentistry and Research, 2011; 35(1): 3-11.

· Baran Y, Zencir S, Çakır Z, Öztürk E, Topçu Z*.  Imatinib-induced apoptosis; A possible link to topoisomerase enzyme inhibition. Journal of Clinical Pharmacy and Therapeutics, 2011; 36(6): 673-679.

· Adan A, Kartal M, Baran Y*. Meme Kanserinin Moleküler Biyolojisi (Molecular Biology of Breast Cancer). 2011,Kitap Bölümü, Meme Kanserine Moleküler Yaklaşım Molecular Approaches to Breast Cancer, ISBN: 978-975-483-928-9.

· Baran Y*. Hücrenin Kritik Kararı; Yaşamak ya da Ölmek. 2011, Kitap Bölümü, I. Hücre Ölümü Araştirma Teknikleri Teorik Kursu, ISBN: 978-975-441-349-6.

· Baran Y*. Hücre Ölümü Çalışmalarında Gen Aktarım Teknikleri. 2011, Kitap Bölümü, I. Hücre Ölümü Araştirma Teknikleri Teorik Kursu, ISBN: 978-975-441-349-6.

· Gucluler G, Piskin O, Baran Y*. The roles of antiapoptotic sphingosine kinase-1 and glucosylceramide genes in drug induced cell death of MCF-7 breast cancer cells. J BUON, 2011; 16(4): 646-651.

· Mese G, Sellitto C, Li L, Wang HZ, Valiunas V, Richard G, Brink PR, White TW. The Cx26-G45E mutation displays increased hemichannel activity in a mouse model of the lethal form of keratitis-ichthyosis-deafness syndrome. Mol Biol Cell. 2011 Dec;22(24):4776-86.

· Restivo G, Nguyen BC, Dziunycz P, Ristorcelli E, Ryan RJ, Özuysal ÖY, Di Piazza M, Radtke F, Dixon MJ, Hofbauer GF, Lefort K, Dotto GP. – “IRF6 is a mediator of Notch pro-differentiation and tumour suppressive function in keratinocytes” – EMBO Journal, 2011, 30(22):4571, doi:10.1038/emboj.2011.325. 

· Ayyanan A, Laribi O, Schuepbach-Mallepell S, Schrick C, Gutierrez M, Tanos T, Lefebvre G, Rougemont J, Yalcin-Ozuysal O, Brisken C. – “Perinatal exposure to bisphenol a increases adult mammary gland progesterone response and cell number” – Molecular Endocrinology,  2011, 25(11):1915, doi: 10.1210/me.2011-1129.

· Isik N, Doganlar S, FRARY A. 2011. Genetic diversity of Turkish olive varieties assessed by simple sequence repeat and sequence-related polymorphism markers. Crop Sci 51:1646-1654. doi:10.2135/cropsci2010.11.0625

· FRARY A, Keles D, Pinar S, Gol D, Doganlar S. 2011. Salt tolerance in Lycopersicon pennellii introgression lines: QTL related to physiological responses. Biologia Plantarum, 55:461-468. doi.org/10.1007/s10535-011-0111-x

· Uluturk ZI, FRARY ADoganlar S. 2011. Determination of genetic diversity in watermelon germplasm. Aust J Crop Sci 5:1832-1836.

· Tumbilen Y, FRARY A, Daunay MC, Doganlar S. 2011. Application of EST-SSRs to examine genetic diversity in eggplant and its close relatives. Turk J Biol, 35:125-136. doi:10.3906/biy-0906-57

· Tumbilen Y, FRARY A, Doganlar S. 2011. Genetic diversity in Turkish eggplant (Solanum melongena) varieties as determined by morphological and molecular analyses. Inter Res J Biotech, 2:16-25. 

· Okmen B, Sigva HO, Gurbuz N, Ulger M, FRARY A, Doganlar S. 2011. Quantitative trait loci (QTL) analysis for antioxidant and agronomically important traits in tomato (Lycopersicon esculentum).Turk J Agric Forest, 35:501-514. doi:10.3906/tar-1008-1207

· Lebeau A, Daunay MC, FRARY A, Palloix A, Wang JF, Dintinger J, Chiroleu F,Wicker E, Prior P. 2011. Bacterial wilt resistance in tomato, pepper, and eggplant: genetic resources respond to diverse strains in the Ralstonia solanacearum species complex. Phytopathology 101:154-165. doi.org/10.1094/PHYTO-02-10-0048

· Uzilday B, Turkan I, Sekmen AH, Ozgur R, Karakaya HC. Comparison of ROS formation and antioxidant enzymes in Cleome gynandra (C4) and Cleome spinosa (C3) under drought stress. Plant Sci. 2012 Jan;182:59-70. doi: 10.1016/j.plantsci.2011.03.015. Epub 2011 Apr 6. 

· Uluisik I, Kaya A, Fomenko DE, Karakaya HC, Carlson BA, Gladyshev VN, Koc A. Boron stress activates the general amino acid control mechanism and inhibits protein synthesis. PLoS One. 2011;6(11):e27772. doi: 10.1371/journal.pone.0027772. 

· Bozdag GO, Uluisik I, Gulculer GS, Karakaya HC, Koc A. Roles of ATR1 paralogs YMR279c and YOR378w in boron stress tolerance. Biochem Biophys Res Commun. 2011 Jun 17;409(4):748-51. doi: 10.1016/j.bbrc.2011.05.080. Epub 2011 May 20. 

· Uluisik I, Kaya A, Unlu ES, Avsar K, Karakaya HC, Yalcin T, Koc A. Genome-wide identification of genes that play a role in boron stress response in yeast. Genomics. 2011 Feb;97(2):106-11. doi: 10.1016/j.ygeno.2010.10.006. Epub 2010 Oct 28. 

· Atik AE, Bozdag GO, Akinci E, Kaya A, Koc A, Yalcin T, Karakaya HC. Proteomic changes during boron tolerance in barley (Hordeum vulgare) and the role of vacuolar proton- translocating ATPase subunit E. Turkısh journal of botany. 35: 379-388. DOI: 10.3906/bot- 1007-29. 2011 

· P.F. Simard, C. Tosun, L. Melnichenko, S. Ivanova, V. Gerzanich, J.M. Simard. “Inflammation of the choroid plexus and ependymal layer of the ventricle following intraventricular hemorrhage”, Transl. Stroke Res., 2011; 2(2):227-31.  

· R. Kuehn, P.F. Simard, I. Driscoll, K. Keledijan, S. Ivanova, C. Tosun, A. Williams, G. Bochicchio, V. Gerzanich, J.M Simard. “Rodent model of direct cranial blast injury”, J. Neurotrauma, 2011; 28(10):2155-69.

· M.T. Koltz*, C. Tosun*, D.B. Kurland, T. Coksaygan, R.J. Castellani, S. Ivanova, V. Gerzanich, J.M. Simard.“Tandem insults of prenatal ischemia plus postnatal raised intrathoracic pressure in a novel rat model of encephalopathy of prematurity”, J. Neurosurg. Pediatr., 2011; 8(6):628-39

 

2010

 

· B. Akgül, K.-W. Lin, H.M.-O. Yang, Y.-H. Chen, T.-H. Lu, C.-H. Chen, T. Kikuchi, Y.-S. Chen, C.-P.D Tu., “Garlic accelerates red blood cell turnover and splenic erythropoietic gene expression in mice: evidence for erythropoietin-independent erythropoiesis”, PLOS ONE, e15358, 2010

· Ekiz A, Can G, Gunduz U, Baran Y*. Nilotinib significantly induces apoptosis in imatinib-resistant K562 cells with wild-type BCR-ABL, as effectively as in parental sensitive counterparts. Hematology, 2010; 15(1): 33-38.

Goktas S, Baran Y, Ural AU, Yazici S*, Aydur E, Basal S,  Avcu F, Pekel A, Dirican B, Beyzadeoglu M. Proteasome Inhibitor Bortezomib Increases Radiation Sensitivity in Androgen Independent Human Prostate Cancer Cells. Urology,

·  Baran Y*, Oztekin C, Bassoy EY. Combination of fludarabine and imatinib induces apoptosis synergistically through loss of mitochondrial membrane potential and increases in caspase-3 enzyme activity in human K562 chronic myleloid leukemia cells. Cancer Investigation, .

Ekiz HA, Baran Y*. Therapeutic Applications of Bioactive Sphingolipids in Hematological Malignancies. International Journal of Cancer, 2010; 

· Kosova B, Tezcanli B, Ekiz HA, Cakir Z, Selvi N, Dalmizrak A, Kartal M, Gunduz U, Baran Y*. Suppression of STAT5A increases chemotherapeutic sensitivity in imatinib-resistant and imatinib-sensitive K562 cells. Leukemia and Lymphoma, 2010; 51(10): 1895-901.

· Sánchez HA, Meşe G, Srinivas M, White TW, Verselis VK. Differentially altered Ca2+ regulation and Ca2+permeability in Cx26 hemichannels formed by the A40V and G45E mutations that cause keratitis ichthyosis deafness syndrome. The Journal of General Physiology. 2010 Jul;136(1):47-62.

· Yalcin-Ozuysal O, Fiche M, Guitierrez M, Wagner K, Raffoul W, Brisken C. – “Antagonistic roles of Notch and p63 in controlling mammary epithelial cell fates” – Cell Death and Differentiation, 2010, 17(10):1600, doi:10.1038/cdd.2010.37

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·  Doganlar O, Doganlar M, FRARY A. 2010. Preliminary phylogeny of the thrips parasitoids of Turkey based on some morphological scales and 28SD2 rDNA with description of a new species. Turk J Zool 34:279-289. doi:10.3906/zoo-0906-29

· Doganlar O, Doganlar, M, FRARY A. 2010. The current status of thrips parasitoids Ceranisus (Hymenoptera: Eulophidae) species in Turkey based on morphology and 28SD2 rDNA. Turk J Entomology 34:89-104. 

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